PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G53310.1
Common NameF4P12.10, REM20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 286aa    MW: 32618.3 Da    PI: 4.2699
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G53310.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.9e-2011101199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffkv+     ++s  l++p +f++    +   +kt++l+ + g+ W+v l  +k sg+ +lt+GW +F+++++Lk g+f++F +dg+++f   v+vf+
  AT3G53310.1  11 FFKVF--LVESASESLMIPLPFMAFLADP--LPKTVKLQGLGGKLWTVSL--KKISGAAYLTRGWPKFAEEHELKNGEFMTFVYDGHRTF--EVSVFD 100
                  77888..444555569*******777655..899****************..********************************998777..999998 PP

                  S CS
           B3  99 k 99 
                  +
  AT3G53310.1 101 R 101
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-218101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-228101IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-189100No hitNo description
PROSITE profilePS5086313.7479102IPR003340B3 DNA binding domain
SMARTSM010192.1E-2011102IPR003340B3 DNA binding domain
PfamPF023627.3E-1711101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-5187278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-9187279IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.43191285IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MADDSELYPR FFKVFLVESA SESLMIPLPF MAFLADPLPK TVKLQGLGGK LWTVSLKKIS  60
GAAYLTRGWP KFAEEHELKN GEFMTFVYDG HRTFEVSVFD RWGSKEVRAE IQAIPLSDSD  120
SDSVVEDEKD STDVVEDDDD EDEDEDEDDD GSFDEDEEIS QSLYPIDEET ATDAAVFEGN  180
LDVEALTNPH FPTTLKNRIY ELLIPANVVK DNNLEFGSSI KYIDGEGTLV GLRGKWADKR  240
VCFKGWDRIC RRNRLKKHQD TVECELLHDD QKMVHSIRVH VLRRDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A9e-18199399At1g16640
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.474860.0silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453394470.0
Genevisible251986_at0.0
Expression AtlasAT3G53310-
AtGenExpressAT3G53310-
ATTED-IIAT3G53310-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G53310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G53310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0875860.0AY087586.1 Arabidopsis thaliana clone 36830 mRNA, complete sequence.
GenBankBT0257240.0BT025724.1 Arabidopsis thaliana At3g53310 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566984.10.0B3 domain-containing protein REM20
SwissprotQ8LAV50.0REM20_ARATH; B3 domain-containing protein REM20
TrEMBLD7LUG91e-167D7LUG9_ARALL; Putative uncharacterized protein
STRINGAT3G53310.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Publications ? help Back to Top
  1. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]